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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Fengling Chen 陈凤玲
About me
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Posts
portfolio
publications
Engineering EMT using 3D micro-scaffold to promote hepatic functions for drug hepatotoxicity evaluation
Published in Biomaterials, 2016
This paper is about the number 1. The number 2 is left for future work.
HiCDB: a sensitive and robust method for detecting contact domain boundaries
Published in Nucleic acids research, 2018
This paper is about the number 1. The number 2 is left for future work.
Recommended citation: Chen, F., Li, G., Zhang, M. Q., & Chen, Y. (2018). HiCDB: a sensitive and robust method for detecting contact domain boundaries. Nucleic acids research, 46(21), 11239-11250. http://academicpages.github.io/files/paper1.pdf
talks
Inter-chromosomal interaction analysis based on population 3D genome modeling
Published:
In this report, I reviewed several 3D genome modeling technologies and a paper to analyze inter-chromosomal interactions.
See the slides here
From Structural Feature to Biological Functions
Published:
In this report, I reviewed the relationship between chromatin structure and biological functions and the preliminary results of HiCDB.
See the slides here
Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation
Published:
In this report, I reviewed the data analysis in terminal differentiation based on promoter Hi-C and ChIP-Seq data which inspired me in the muscle differentiation data analysis.
See the slides here
HiCDB: a sensitive and robust method for detecting contact domain boundaries
Published:
In this report, I talked about my own method HiCDB to detect chromatin contact domain boundaries (CDBs) robustly and sensitively.
See the slides here See also the videos from www.seq.cn
Having Fun in Hi-C Data Analysis
Published:
In this report, I reviewed Hi-C data analysis in almost all scales.
See the slides here
3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-ALL
Published:
In this report, I talked about my own work exploring T-ALL 3D genome changes.
See the slides here
Basic Machine learning Methods (1) Dimension reduction
Published:
In this workshop, I talked about the principles and applications of dimension reduction methods including PCA, tsne, Umap.
See the slides here